mapmuts¶
This package is obsolete!¶
IMPORTANT NOTE: mapmuts has been superseded by dms_tools. Unless you need legacy functions of mapmuts, we suggest that you use dms_tools instead.
Package overview¶
mapmuts is a Python package for mapping mutations from deep-sequencing of protein-coding genes. It is specifically designed for the analysis of overlapping Illumina paired-end reads.
mapmuts source code is available on GitHub.
mapmuts documentation is available on GitHub Pages.
The mapmuts package was created by Jesse Bloom.
Using mapmuts¶
This package can be run using a series of scripts, and does not require you to directly interface with the Python modules.
Some examples are provided with the package; they can be found in the ./examples/ subdirectory of the main mapmuts package.
Documentation¶
- Installation
- Workflow
- Scripts
- mapmuts_makealignments.py
- mapmuts_alignmentsummaryplot.py
- mapmuts_parsecounts.py
- mapmuts_parsesummaryplots.py
- mapmuts_countparsedmuts.py
- mapmuts_inferpreferences.py
- mapmuts_inferdifferentialpreferences.py
- mapmuts_preferencescorrelate.py
- mapmuts_preferencemeans.py
- mapmuts_siteprofileplots.py
- mapmuts_entropycomparison.py
- Other scripts
- Examples
- Python modules
- Shortcomings
- Acknowledgements