mapmuts Package

Package for mapping mutations for analysis of deep-sequencing libraries.

Python modules

The package consists of the following Python modules:

• main
• align
• io
• latex
• sequtils
• plot
• simulate
• stats
• bayesian
• dssp
• weblogo

C-extensions

Some of the key functions in the Python modules are also coded in C-extensions for better performance. These C-extensions can be accessed directly through the Python functions, using options such as use_calign when you call the function, and so you typically would not need to address these C-extensions directly. The extensions are:

• calign
• csequtils

Acknowledgements

mapmuts is written by Jesse Bloom.