For individual samples (which can be selected using the dropdown box below the pie charts), this plot shows the percentage of aligned mitochondrial reads that map to each species as determined in the current study. Pie charts are shown for all chordates and just mammals.
For the samples also analyzed in Crits-Christoph et al (2023) , there are also pie charts showing the mitochondrial DNA composition determined in that study for all species in Table S3 of Crits-Christoph et al, and for all species plotted in Figure 1 of Crits-Christoph et al (note Table S3 of their paper reports counts only for mammals, and Figure 1 of their paper only plots counts for a subset of these mammals).
Use the clickable legend below the plot to show some of these species sets.
Mouseover the pie slices for more details about counts for individual species, as well as the total number of high-quality reads (passing pre-processing) and the number of reads that align to SARS-CoV-2.
See Bloom et al, bioRxiv, DOI 10.1101/2023.04.25.538336 for a paper describing this analysis.
See https://github.com/jbloom/Huanan_market_samples for results files and a fully reproducible computational pipeline.
See https://jbloom.github.io/Huanan_market_samples for links to all interactive plots.