This plot shows the composition of contigs that align to the genome (or transcriptome as alignments allow splicing) for each sample. Currently only calculated for sample Q61, which is the only sample for which such data are shown in Crits-Christoph et al (2023) .
Mouseover the pie slices for more details about the counts for individual species.
See Bloom et al, bioRxiv, DOI 10.1101/2023.04.25.538336 for a paper describing this analysis.
See https://github.com/jbloom/Huanan_market_samples for results files and a fully reproducible computational pipeline.
See https://jbloom.github.io/Huanan_market_samples for links to all interactive plots.