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Python modules in `phyloExpCM`_
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Most of the functionality can be accessed directly from the scripts without interfacing with the `Python`_ code. However, here is the `Python`_ API documentation.

.. toctree::
   :maxdepth: 4

   phyloExpCM_package
   runphyml
   io
   submatrix
   hyphy
   packagedata
   plot
   phylodistances


.. include:: weblinks.txt